Softwares

Anaconda (Python virtual environments manger)

Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda. To install Anaconda, you can use the following command:

ENV CONDA_DIR /opt/conda
RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda.sh && /bin/bash ~/miniconda.sh -b -p /opt/conda
ENV PATH=$CONDA_DIR/bin:$PATH

COPY ../src/environment.yml ./tmp/environment.yml
RUN conda env create -f tmp/environment.yml
RUN /bin/bash -c "conda init bash"
RUN echo "source /opt/conda/bin/activate your_environment_name" >> /home/${USER_NAME}/.bashrc